Linux Tips

From Lupyan_Lab_Wiki
Jump to: navigation, search


Basic linux commands[edit]

Listing files, changing directories, and making new directories[edit]

Find out what directory you're currently in

  • Go to your home directory
cd ~
  • Make a new subdirectory called data
mkdir data
  • Now go into the directory
cd data
  • Now go back to the directory above it
cd ..
  • List the files in your home directory
ls ~
  • List the files in the current directory with a bunch of extra information
ls -l
  • List just the names of the files, in a single column, with no extra information.
ls -A1
  • List just the text files, single column, no extra info, and store the list in a file called myTextFiles.txt
ls -A1 *txt > myTextFiles.txt
  • Display a list of files sorted by date, with the most recent first
ls -lt
  • Display a list of files sorted by date, with the oldest first
ls -ltr
  • To make a new directory, use the command mkdir
mkdir newDirectory

Copy/move/delete files[edit]

  • copy all the files whose filename contains the word data into the data directory
cp *data* data
  • move all the files whose filename contains the word data into the data directory.
mv *data* data
  • delete all the files containing the word data in the current directory. (Be careful with this! These files get deleted, bypassing the Trash/Recycle-bin)
rm *data*

Rename files[edit]

  • simple renaming of a file
mv crappyFilename.png usefulFilename.png
  • more complicated renaming of a file - prefix a string to a filename: Grab a list of all the files with the extension .png and then prefixing "mask_" to each one
for filename in *.png; do mv "$filename" "mask_$filename"; done;
  • more complicated renaming of a file - replace a part of all filenames with something else
for filename in *.png*; do mv "$filename" "${filename//maskSquare/maskCircle}"; done

Display a file[edit]

  • Print a history of your commands to the screen
cat ~/.bash_history
  • one screen at a time...
cat ~/.bashrc | more
  • just the top
head ~/.bashrc
  • just the bottom
tail ~/.bashrc
  • the first 10 lines
head -n 10 ~/.bashrc

Combine (concatenate) two or more files and write the output to another file[edit]

  • Combine two files and print the results to the screen
cat file1.txt file2.txt

(conCATenate, get it?)

  • Combine all files with the word 'data' in the filename
cat *data*
  • Do the same and write the output to a new file
cat *data* > allDat.txt

(if allDat.txt already exists, it will be overwritten) Caveat: what happens if you try cat *data* > alldata.txt

  • Append the output to a file (i.e., add to the end of the file)
cat *data* >> allDat.txt

Some miscellenous tips[edit]

Get help on a command[edit]

  • To look up detailed specifications on a command, type:
man ls

You can scroll through the documentation using PgUp/PgDown or up and down arrows. To exit, press q

  • For a quick refresher on the arguments
ls --help
  • There are many many many linux commands. The best way to find one is probably googling for it, e.g., google for how to zip a file in linux

You can also try the apropos command in the terminal. For example, try  apropos zip

Become a more proficient computer user[edit]

  • Use command-tab (Mac) , alt-tab (windows) to switch between programs.
  • Learn keyboard shortcuts: shortcuts for Cut, Copy, Past, Select-All, Find, undo/redo, should be second nature. Here's a [p list of Mac shortcuts], and a list of Windows shortcuts.

Navigating a command line efficiently[edit]

  • You can cycle through previous commands using the up/down arrows
  • Unlike a graphical text editor, you can't mouse-click on a particular spot in a command line. For short commands, you can just use the left and right arrows to move the text insertion point in a command line. The following keyboard shortcuts are handy for navigating around longer command lines:

Ctrl-a moves to the start of the command
Ctrl-e moves to the end of the command

You can also use the 'Home' and 'End' keys! (perhaps the most underused keys on a keyboard

Esc-b (i.e., the Escape key followed by the b key) moves back one word
Esc-f moves forward one word
Ctrl-k will cut the command line from the cursor point forward and place it in a buffer (aka clipboard)
Ctrl-y will paste what is in the buffer after the current cursor position

  • Use tab completion

type cd then a space then the first letter or two of the directory you want to go to. Press <tab>.  Magic.
Caveat: commands like ls and cd are little executable programs. The stuff that follows the command is an argument (information telling the program what you want it to do). As with all programs, you must put a space in between the program name and its arguments, so it's ls --help, not ls--help

  • If you're using cygwin (linux shell for Windows), try this at the prompt:
explorer .

Count words/lines/characters in a file[edit]

wc ~/.bash_history
  • display the number of lines for all the text files in the current directory
find . -name "*txt" -exec wc -l {} \;

Get a particular column from a file[edit]

  • There are many ways to do this, but the simplest is:
 cut -f1 test.txt

This gets the first column from a file called test.txt which has several columns separated by a tab (cut defaults to a tab delimiter. You can specify your own with -d "delim"

  • A more powerful way of selecting particular columns is using awk. See if you can figure out how this works:
ls -l | awk '{print $6,$7,$8}'

How would you use awk to get a list of word-counts for all the .txt files in your directory?

Send an output of one command to another command[edit]

  • You do this using the pipe operator '|' (so that's what that key is!)

For example, the grep command in its basic form searches through text and outputs a line that matches some search term. Recall that you created an alias for psych711 in your .bashrc file. Let's find it.

cat ~/.bashrc | grep psych711

This means send the output of cat ~/.bashrc (the contents of the .bashrc file) to the command grep which then tries to find "psych711" within that output.
Caveat: you can also just type grep "psych711" ~/.bashrc, but in some cases using the '|' is the only way to do what you need to do.